Research Article |
Corresponding author: Martin Schwentner ( martin.schwentner@outlook.com ) Academic editor: Danilo Harms
© 2018 Martin Schwentner, Gonzalo Giribet.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Schwentner M, Giribet G (2018) Phylogeography, species delimitation and population structure of a Western Australian short-range endemic mite harvestman (Arachnida: Opiliones: Pettalidae: Karripurcellia). Evolutionary Systematics 2: 81-87. https://doi.org/10.3897/evolsyst.2.25274
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The mite harvestmen of the genus Karripurcellia Giribet, 2003 are endemic to the tall, wet eucalypt forests of south-western Western Australia, a region known as a hotspot for biodiversity. Currently, there are two accepted species, K. peckorum Giribet, 2003 and K. sierwaldae Giribet, 2003, both with type localities within the Warren National Park. We obtained 65 COI mtDNA sequences from across the entire distributional range of the genus. These sequences, falling into two to three geographically separate groups, probably correspond to two species. Morphologically, all of the studied specimens correspond to K. peckorum, suggesting cryptic speciation within that species. A few common haplotypes occur in more than one population, but most haplotypes are confined to a single population. As a result, populations are genetically differentiated and gene flow after initial colonization appears to be very limited or completely lacking. Our study provides another example of short-range endemism in an invertebrate from the south-western mesic biome.
biodiversity, cryptic species, endemism, harvestmen
Pettalidae is an old lineage of mite harvestmen (Arachnida, Opiliones, Cyphophthalmi) confined to the circum-Antarctic terranes, persisting on what are nowadays the former landmasses of southern Gondwana (i.e., southern South America, South Africa, Madagascar, Sri Lanka, Australia and New Zealand) (
Due to their low vagility, restriction to moist habitats, and usually isolated ranges, pettalids follow a typical distribution of short-range endemics (
Distribution of haplotypes. A) Map of sampling localities. B) Median-joining haplotype network. Each mutation is indicated by a dash on the lines connecting haplotypes, mutations resulting in an amino acid changes are marked in red. The size of haplotypes correspond to their observed frequency as indicated by the scale and the colors correspond to the respective localities.
All individuals were fixed in absolute ethanol upon collection and stored at -20°C in the collections of the Museum of Comparative Zoology (MCZ) or the Western Australian Museum (WAM) (Table
Details on individuals and localities. Collection number for the Museum of Comparative Zoology (MCZ) and the Western Australian Museum (WAM) are provided. WA, Western Australia.
MCZ No. | WAM No. | Number of individuals studied | GenBank accession numbers | locality | latitude | longitude | collection date |
IZ–132345 | – | 2 | MH133149–50 | Bientennial Tree, Warren N.P., WA | –34.51812°, 115.94858° | 9–10.vi.2004 | |
IZ–132346 | – | 8 | MH133151–52, MH133183–88 | Crowea forest, WA | –34.53989°, 116.04100° | 07.x.2004 | |
IZ–134719 | – | 1 | MH133153 | Beedelup Nat. Park, Seven Day Road, WA | –34.34187°, 115.86191° | 11.x.2011 | |
IZ–134720 | – | 9 | MH133125–33 | Dog Pool, Bibbulmun track at crossing of Shannon River, Shannon N.P., WA | –34.76067°, 116.37721° | 12.x.2011 | |
IZ–134721 | – | 10 | MH133134–41 | Boorara–Gardner N.P., KTC Road, cross with Canterbury River, WA | –34.70023°, 116.22230° | 12.x.2011 | |
IZ–134722 | T106678 | 4 | MH133154–57 | Beedulup N.P., Carey Road,18.3 km from Pemberton, WA | –34.39083°, 115.86111° | 24.x.2009 | |
IZ–134723 | T106677 | 7 | MH133158–64 | Beedelup N.P., Seven Day Road, 20.4 km NW of Pemberton, WA | –34.34222°, 115.86055° | 24.x.2009 | |
IZ–134724 | T108156 | 5 | MH133144–48 | Boorara–Gardner N.P., KTC Road, WA | –34.68944°, 116.21500° | 16.x.2009 | |
IZ–134725 | T106679 | 10 | MH133165–74 | Gloucester N.P., beside Burma Road, near junction with Eastbrook Trail, WA | –34.45027°, 116.06277° | 17.x.2009 | |
IZ–134726 | T106680 | 9 | MH133175–82 | Greater Hawke N.P., Gloucester Road, 9.5 km SW of Pemberton, WA | –34.53361°, 116.02055° | 16.x.2009 |
All sequences were aligned with GENEIOUS Pro 7.1.7. Seven KarripurcelliaCOI sequences were available on GenBank (accession numbers: KU207393-KU207397, DQ518106, DQ518107). These sequences originated from the same collections as studied herein, and we could not rule out that we resequenced some of these previously sequenced individuals. To avoid analyzing duplicates, we included only one (KU207397 from IZ-134726) of the published sequences in our analyses as this sequence differed by at least one mutation from all our newly generated sequences, suggesting its originality. The other six published sequences were all identical with sequences generated herein from the respective locality. The alignment was translated in MEGA7 (
Phylogenetic relationships were reconstructed with Maximum Parsimony in MEGA7 and with Bayesian Inference in MrBayes 3.2.6 (
A median-joining haplotype network of all sequences was calculated with Network 5 (Fluxus Technology Ltd.) and re-drawn to scale with Adobe Illustrator CC 2017. Pairwise uncorrected p-distances were computed with MEGA7. Population genetic indices, pairwise φST (including only localities from which at least four sequences were available) and AMOVA were calculated in Arlequin 3.5.2.2 (
The 528 bp alignment comprised 65 sequences of Karripurcellia, had 25 variable sites and the translated amino acid alignment featured two amino acid substitutions in total (not considering the outgroup): a change of Thr to Ile in position 136 in three out of nine individuals from IZ-134726; and a change from Ser to Asn (or vice versa) in position 130 between the individuals from the north and south populations. The latter amino acid change is thus diagnostic for these clades. No stop codons were present.
The examined Karripurcellia specimens fall into two or three geographically separated groups (Figs
Genetic indices. Standard genetic indices are reported for the whole species as well as for each of the groups.
Number individuals | Number haplotypes | Haplotype diversity (h) | Nucleotide diversity (π) | Tajima’s D | Fu’s Fs | |
all | 65 | 20 | 0.921 +/- 0.015 | 0.0112 +/- 0.0060 | 0.369 (p = 0.73) | -2.43 (p= 0.25) |
”northern–central” | 42 | 13 | 0.892 +/- 0.027 | 0.0048 +/- 0.0029 | -0.734 (p= 0.24) | -3.98 (p= 0.04) |
“northern” | 12 | 3 | 0.530 +/- 0.136 | 0.001 +/- 0.001 | -0.382 (p=0.32) | -0.36 (p=0.28) |
“central” | 30 | 10 | 0.858 +/- 0.046 | 0.0037 +/- 0.0024 | -1.183 (p=0.12) | -3.32 (p=0.034) |
“southern” | 24 | 7 | 0.721 +/- 0.071 | 0.0025 +/- 0.0018 | -0.908 (p= 0.22) | -2.14 (p=0.07) |
“northern” | “central” | “southern” | |
“northern” | 0.0 - 0.4 | ||
”central” | 0.2 - 1.3 | 0.0 - 1.1 | |
“southern” | 1.7 - 2.7 | 1.3 - 2.5 | 0.0 - 0.1 |
AMOVA. In the AMOVA the populations correspond to the individuals collected at each locality, respectively, and the groups correspond to the geographically separated groups A) ”northern–central” and “southern” (FSC = 0.554 (p = 0.000), FST = 0.896 (p = 0.000) and FCT = 0.766 (p = 0.01)) and B) “northern”, “central” and “southern” (FSC = 0.367 (p = 0.000), FST = 0.874 (p = 0.000) and FCT = 0.800 (p = 0.000)).
Sum of squares | Percentage of variation | |
---|---|---|
A | ||
variance among groups | 124.4 | 76.59 |
variance among populations within groups | 36.7 | 12.98 |
variance within populations | 29.5 | 10.43 |
B | ||
variance among groups | 144.3 | 80.04 |
variance among populations within groups | 16.9 | 7.3 |
variance within populations | 29.6 | 12.63 |
Pairwise genetic differentiation. Genetic differentiation was measured with pairwise φST. Only populations with at least four sequenced individuals are shown. P-values Bonferroni corrected to account for multiple comparisons.
“northern“ | “central“ | “southern“ | ||||||
134723 | 134722 | 132346 | 134726 | 134725 | 134724 | 134721 | 134720 | |
134723 | ||||||||
134722 | 0.20 | |||||||
132346 | 0.75** | 0.78** | ||||||
134726 | 0.61** | 0.62** | 0.21** | |||||
134725 | 0.71** | 0.71** | 0.43** | 0.35** | ||||
134724 | 0.95** | 0.96** | 0.91** | 0.83** | 0.91** | |||
134721 | 0.89** | 0.89** | 0.86** | 0.81** | 0.88** | 0.09 | ||
134720 | 0.95** | 0.96** | 0.93** | 0.86** | 0.93** | 0.65** | 0.48** |
Phylogenetic relationships. The depicted phylogenetic tree is based on the maximum likelihood analysis. Bootstrap support from maximum likelihood as well as posterior probabilities from the Bayesian analysis are depicted on the respective branches. Colors correspond to the respective localities (compare Fig.
Three haplotypes were shared among some localities, one haplotype each for the “northern”, “central” and “southern” populations (Fig.
Only a handful of studies have looked at population structure among Cyphophthalmi, but the few available have focused on pettalids. The New Zealand species Aoraki denticulata is known as an example of an old species with extreme population-level variation, without a single haplotype shared between localities as distant as the ones sampled here and with p-distances of up to 22% for the same marker (
The sampled Karripurcellia show low genetic variation but clear structure and suggest the presence of a species boundary between the “northern–central” and “southern” samples in the ABGD analysis, a pattern congruent with both the haplotype network and the phylogenetic trees. The observed variation between the “northern” and “central” clades probably reflects intraspecific genetic variation between populations. Of seven of the herein studied populations the conserved nuclear ribosomal marker 18S rRNA was available on GenBank from a previous study on pettalid phylogeny (
The type localities of K. peckorum and of K. sierwaldae were both reported as from the Warren National Park (which corresponds with the distribution of the “central” group), but no more precise data were available from these specimens collected in 1980. These two species are clearly distinguishable morphologically, among other salient features by the presence of a strong ventral process in the palp trochanter of K. sierwaldae (see
It is clear that morphologically none of the identified samples correspond to the species K. sierwaldae, known only from Warren NP and from a small adjacent area, Brockman National Park. We expected that the genetically different specimens from locality IZ-134726 would be the sympatric K. sierwaldae, but morphologically these specimens are indistinguishable from K. peckorum—lacking clear autapomorphies of K. sierwaldae, such as the ventral process in the palp trochanter. Likewise, the southern specimens resemble K. peckorum morphologically, but these, in agreement with all the sources of genetic information examined here, probably correspond to a different cryptic species of Karripurcellia.
The genetic structure within each group and species suggest that dispersal and gene flow are very low or non-existent between populations, even between those separated by only a few kilometers. The only haplotypes shared among populations are the most common haplotypes. All other haplotypes are probably derived from these common haplotypes. Possibly expansion commenced from one “northern–central” and one “southern” population, which featured the respective common haplotype, into the surrounding localities. At each locality new haplotypes arose and there is no indication of any genetic exchange following the initial expansion and colonization. As a result, populations are highly structured and with high levels of endemicity at the species as well as genetic level. Similar distribution patterns of species or intraspecific genetic lineages in this part of the SWWA have been observed for several other taxa from similar localities and with similar life styles, like pseudoscorpions (
Our study provides genetic evidence for geographic structuring among the populations of the SWWA endemic genus Karripurcellia, identifying two putative species, K. peckorum and a new “southern” species. Genetic data also suggest the presence of a cryptic species sympatric with K. peckorum that is different from K. sierwaldae, a species that remains elusive and that is only known from the original collections by S. Peck in 1980. Our results also corroborate the synonymy of K. harveyi with K. peckorum previously proposed by
Mark Harvey, from the Western Australian Museum, and Danilo Harms, from the Universität Hamburg, provided numerous specimens for this study as well as advice on localities and geography of the region. Mark Harvey also organized one of the collecting trips with GG. Klaas H. Gerdes (Universität Hamburg) provided the map. We thank Editor Danilo Harms, Mark Harvey, Dale Roberts and a third anonymous reviewer for their helpful comments on an earlier version of this manuscript.